Olena Publications

	Author	Title	Published in	Date
The Dahu Graph-Cut for Interactive Segmentation on 2D/3D Images	Minh Ôn Vũ Ngoc Edwin Carlinet Jonathan Fabrizio Thierry Géraud	The Dahu Graph-Cut for Interactive Segmentation on 2D/3D Images	Pattern Recognition	3 December 2022
Some Equivalence Relation between Persistent Homology and Morphological Dynamics	Nicolas Boutry Laurent Najman Thierry Géraud	Some Equivalence Relation between Persistent Homology and Morphological Dynamics	Journal of Mathematical Imaging and Vision	17 May 2022
Learning Grayscale Mathematical Morphology with Smooth Morphological Layers	Romain Hermary Guillaume Tochon Élodie Puybareau Alexandre Kirszenberg Jesús Angulo	Learning Grayscale Mathematical Morphology with Smooth Morphological Layers	Journal of Mathematical Imaging and Vision	4 April 2022
Local Intensity Order Transformation for Robust Curvilinear Object Segmentation	Tianyi Shi Nicolas Boutry Yongchao Xu Thierry Géraud	Local Intensity Order Transformation for Robust Curvilinear Object Segmentation	IEEE Transactions on Image Processing	22 March 2022
Max-Tree Computation on GPUs	Nicolas Blin Edwin Carlinet Florian Lemaitre Lionel Lacassagne Thierry Géraud	Max-Tree Computation on GPUs	IEEE Transactions on Parallel and Distributed Systems	9 March 2022
QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation — Analysis of Ranking Scores and Benchmarking Results	Raghav Mehta Angelos Filos Ujjwal Baid Chiharu Sako Richard McKinley Michael Rebsamen Katrin Dätwyler Raphael Meier Piotr Radojewski Gowtham Krishnan Murugesan Sahil Nalawade Chandan Ganesh Ben Wagner YuFang F. Baowei Fei Ananth J Madhuranthakam Joseph A Maldjian Laura Daza GómezCatalina Pablo Arbeláez Chengliang Dai Shuo Wang Hadrien Reynaud Yuanhan Mo Elsa Angelini Yike Guo Wenjia Bai BanerjeeSubhashis Linmin Pei Murat AK Sarahi Rosas-González Ilyess Zemmoura Clovis Tauber Minh Hoang Vu Tufve Nyholm Tommy Löfstedt Laura Mora Ballestar Veronica Vilaplana Hugh McHugh Gonzalo Maso Talou Alan Wang Jay Patel Ken Chang Katharina Hoebel Mishka Gidwani Nishanth Arun Sharut Gupta Mehak Aggarwal Praveer Singh Elizabeth R Gerstner Jayashree Kalpathy-Cramer Nicolas Boutry Alexis Huard VidyaratneLasitha Md Monibor Rahman Khan M Iftekharuddin Joseph Chazalon Elodie Puybareau TochonGuillaume Jun Ma Mariano Cabezas LladoXavier Arnau Oliver Liliana Valencia Sergi Valverde Mehdi Amian SoltaninejadMohammadreza Andriy Myronenko Ali Hatamizadeh Xue Feng Quan Dou Nicholas Tustison MeyerCraig Nisarg A Shah Sanjay Talbar WeberMarc-André Abhishek Mahajan Andras Jakab Roland Wiest Hassan M Fathallah-Shaykh Arash Nazeri Mikhail Milchenko Daniel Marcus Aikaterini Kotrotsou Rivka Colen John Freymann Justin Kirby Christos Davatzikos MenzeBjoern Spyridon Bakas Yarin Gal Tal Arbel	QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation — Analysis of Ranking Scores and Benchmarking Results	Journal of Machine Learning for Biomedical Imaging (MELBA)	9 January 2022
AGAT: Building and Evaluating Binary Partition Trees for Image Segmentation	Jimmy Francky Randrianasoa Camille Kurtz Éric Desjardin Nicolas Passat	AGAT: Building and Evaluating Binary Partition Trees for Image Segmentation	SoftwareX	17 December 2021
Strong Euler Wellcomposedness	Nicolas Boutry Rocio Gonzalez-Diaz Maria-Jose Jimenez Eduardo Paluzo-Hildago	Strong Euler Wellcomposedness	Journal of Combinatorial Optimization	23 November 2021
Continuous Well-Composedness implies Digital Well-Composedness in n-D	Nicolas Boutry Rocio Gonzalez-Diaz Laurent Najman Thierry Géraud	Continuous Well-Composedness implies Digital Well-Composedness in n-D	Journal of Mathematical Imaging and Vision	9 November 2021
VerSe: A Vertebrae Labelling and Segmentation Benchmark for Multi-detector CT Images	Anjany Sekuboyina Malek E Husseini Amirhossein Bayat Maximilian Löffler Hans Liebl Hongwei Li Giles Tetteh Jan Kukačka Christian Payer Darko Stern Martin Urschler Maodong Chen Dalong Cheng Nikolas Lessmann Yujin Hu Tianfu Wang Dong Yang Daguang Xu and Felix Ambellan Tamaz Amiranashvili Moritz Ehlke Hans Lamecker Sebastian Lehnert Marilia Lirio Nicolás Pérez de Olaguer Heiko Ramm Manish Sahu Alexander Tack Stefan Zachow Tao Jiang Xinjun Ma Christoph Angerman Xin Wang Kevin Brown Matthias Wolf Alexandre Kirszenberg Élodie Puybareau Di Chen Yiwei Bai Brandon H Rapazzo Timyoas Yeah Amber Zhang Shangliang Xu Feng Houa Zhiqiang He Chan Zeng Zheng Xiangshang Xu Liming Tucker J Netherton Raymond P Mumme Laurence E Court Zixun Huang Chenhang He Li-Wen Wang Sai Ho Ling Lê Duy Huỳnh Nicolas Boutry Roman Jakubicek Jiri Chmelik Supriti Mulay Mohanasankar Sivaprakasam Johannes C Paetzold Suprosanna Shit Ivan Ezhov Benedikt Wiestler Ben Glocker Alexander Valentinitsch Markus Rempfler Björn H Menze Jan S Kirschke	VerSe: A Vertebrae Labelling and Segmentation Benchmark for Multi-detector CT Images	Medical Image Analysis	22 July 2021
Deep Learning for Detection and Segmentation of Artefact and Disease Instances in Gastrointestinal Endoscopy	Sharib Ali Mariia Dmitrieva Noha Ghatwary Sophia Bano Gorkem Polat Alptekin Temizel Adrian Krenzer Amar Hekalo Yun Bo Guo Bogdan Matuszewski Mourad Gridach Irina Voiculescu Vishnusai Yoganand Arnav Chavan Aryan Raj Nhan T Nguyen Dat Q Tran Le Duy Huynh Nicolas Boutry Shahadate Rezvy Haijian Chen Yoon Ho Choi Anand Subramanian Velmurugan Balasubramanian Xiaohong W Gao Hongyu Hu Yusheng Liao Danail Stoyanov Christian Daul Stefano Realdon Renato Cannizzaro Dominique Lamarque Terry Tran-Nguyen Adam Bailey Barbara Braden James East Jens Rittscher	Deep Learning for Detection and Segmentation of Artefact and Disease Instances in Gastrointestinal Endoscopy	Medical Image Analysis	24 February 2021
Topological Properties of the First Non-Local Digitally Well-Composed Interpolation on n-D Cubical Grids	Nicolas Boutry Laurent Najman Thierry Géraud	Topological Properties of the First Non-Local Digitally Well-Composed Interpolation on n-D Cubical Grids	Journal of Mathematical Imaging and Vision	3 September 2020
Equivalence between Digital Well-Composedness and Well-Composedness in the Sense of Alexandrov on n-D Cubical Grids	Nicolas Boutry Laurent Najman Thierry Géraud	Equivalence between Digital Well-Composedness and Well-Composedness in the Sense of Alexandrov on n-D Cubical Grids	Journal of Mathematical Imaging and Vision	3 September 2020
A New Minimum Barrier Distance for Multivariate Images with Applications to Salient Object Detection, Shortest Path Finding, and Segmentation	Minh Ôn Vũ Ngoc Nicolas Boutry Jonathan Fabrizio Thierry Géraud	A New Minimum Barrier Distance for Multivariate Images with Applications to Salient Object Detection, Shortest Path Finding, and Segmentation	Computer Vision and Image Understanding	2 June 2020
Braids of Partitions for the Hierarchical Representation and Segmentation of Multimodal Images	Guillaume Tochon Mauro Dalla Mura Miguel Angel Veganzones Thierry Géraud Jocelyn Chanussot	Braids of Partitions for the Hierarchical Representation and Segmentation of Multimodal Images	Pattern Recognition	1 July 2019
Benchmark on Automatic 6-month-old Infant Brain Segmentation Algorithms: The iSeg-2017 Challenge	Li Wang Dong Nie Guannan Li Élodie Puybareau Jose Dolz Qian Zhang Fan Wang Jing Xia Zhengwang Wu Jiawei Chen Kim-Han Thung Toan Duc Bui Jitae Shin Guodong Zeng Guoyan Zheng Vladimir S Fonov Andrew Doyle Yongchao Xu Pim Moeskops Josien P W Pluim Christian Desrosiers Ismail Ben Ayed Gerard Sanroma Oualid M Benkarim Adrià Casamitjana Verónica Vilaplana Weili Lin Gang Li Dinggang Shen	Benchmark on Automatic 6-month-old Infant Brain Segmentation Algorithms: The iSeg-2017 Challenge	IEEE Transactions on Medical Imaging	11 April 2019
Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities: Results of the WMH Segmentation Challenge	H J Kuijf J M Biesbroek J de Bresser R Heinen S Andermatt M Bento M Berseth M Belyaev M J Cardoso A Casamitjana D L Collins M Dadar A Georgiou M Ghafoorian D Jin A Khademi J Knight H Li X Lladó M Luna Q Mahmood R McKinley A Mehrtash S Ourselin B Park H Park S H Park S Pezold L Rittner C H Sudre S Valverde V Vilaplana R Wiest Z Xu G Zeng J Zhang G Zheng C Chen W van der Flier F Barkhof M A Viergever G J Biessels Élodie Puybareau Yongchao Xu	Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities: Results of the WMH Segmentation Challenge	IEEE Transactions on Medical Imaging	10 April 2019
How to Make n-D Plain Maps Alexandrov-Well-Composed in a Self-dual Way	Nicolas Boutry Thierry Géraud Laurent Najman	How to Make n-D Plain Maps Alexandrov-Well-Composed in a Self-dual Way	Journal of Mathematical Imaging and Vision	4 February 2019
High Throughput Automated Detection of Axial Malformations in Medaka Embryo	Diane Genest Élodie Puybareau Marc Léonard Jean Cousty Noémie De Crozé Hugues Talbot	High Throughput Automated Detection of Axial Malformations in Medaka Embryo	Computers in Biology and Medicine	22 January 2019
Weakly Well-Composed Cell Complexes over nD Pictures	Nicolas Boutry Rocio Gonzalez-Diaz Maria-Jose Jimenez	Weakly Well-Composed Cell Complexes over nD Pictures	Information Sciences	4 July 2018
Parallel Computation of Component Trees on Distributed Memory Machines	Markus Götz Gabriele Cavallaro Thierry Géraud Matthias Book Morris Riedel	Parallel Computation of Component Trees on Distributed Memory Machines	IEEE Transactions on Parallel and Distributed Systems	2 April 2018
The Challenge of Cerebral Magnetic Resonance Imaging in Neonates: A New Method using Mathematical Morphology for the Segmentation of Structures Including Diffuse Excessive High Signal Intensities	Yongchao Xu Baptiste Morel Sonia Dahdouh Élodie Puybareau Alessio Virzì Hélène Urien Catherine Adamsbaum Isabelle Bloch Thierry Géraud	The Challenge of Cerebral Magnetic Resonance Imaging in Neonates: A New Method using Mathematical Morphology for the Segmentation of Structures Including Diffuse Excessive High Signal Intensities	Medical Image Analysis	22 March 2018
A Tutorial on Well-Composedness	Nicolas Boutry Thierry Géraud Laurent Najman	A Tutorial on Well-Composedness	Journal of Mathematical Imaging and Vision	12 October 2017
Augmented Songbook: an Augmented Reality Educational Application for Raising Music Awareness	Marçal Rusiñol Joseph Chazalon Katerine Diaz-Chito	Augmented Songbook: an Augmented Reality Educational Application for Raising Music Awareness	Multimedia Tools and Applications	29 June 2017
Object tracking by hierarchical decomposition of hyperspectral video sequences: Application to chemical gas plume tracking	Guillaume Tochon Jocelyn Chanussot Mauro Dalla Mura Andrea Bertozzi	Object tracking by hierarchical decomposition of hyperspectral video sequences: Application to chemical gas plume tracking	IEEE Transactions on Geoscience and Remote Sensing	20 April 2017
Hierarchical image simplification and segmentation based on Mumford-Shah-salient level line selection	Yongchao Xu Thierry Géraud Laurent Najman	Hierarchical image simplification and segmentation based on Mumford-Shah-salient level line selection	Pattern Recognition Letters	20 May 2016
Hierarchical Segmentation Using Tree-Based Shape Spaces	Yongchao Xu Edwin Carlinet Thierry Géraud Laurent Najman	Hierarchical Segmentation Using Tree-Based Shape Spaces	IEEE Transactions on Pattern Analysis and Machine Intelligence	11 April 2016
TextCatcher: A method to detect curved and challenging text in natural scenes	Jonathan Fabrizio Myriam Robert-Seidowsky Séverine Dubuisson Stefania Calarasanu Raphaël Boissel	TextCatcher: A method to detect curved and challenging text in natural scenes	International Journal on Document Analysis and Recognition	8 April 2016
What is a good evaluation protocol for text localization systems? Concerns, arguments, comparisons and solutions	Stefania Calarasanu Jonathan Fabrizio Séverine Dubuisson	What is a good evaluation protocol for text localization systems? Concerns, arguments, comparisons and solutions	Image and Vision Computing	1 February 2016
MToS: A Tree of Shapes for Multivariate Images	Edwin Carlinet Thierry Géraud	MToS: A Tree of Shapes for Multivariate Images	IEEE Transactions on Image Processing	26 October 2015
Connected Filtering on Tree-Based Shape-Spaces	Yongchao Xu Thierry Géraud Laurent Najman	Connected Filtering on Tree-Based Shape-Spaces	IEEE Transactions on Pattern Analysis and Machine Intelligence	5 June 2015
Tree-Based Morse Regions: A Topological Approach to Local Feature Detection	Yongchao Xu Thierry Géraud Pascal Monasse Laurent Najman	Tree-Based Morse Regions: A Topological Approach to Local Feature Detection	IEEE Transactions on Image Processing	3 October 2014
A Comparative Review of Component Tree Computation Algorithms	Edwin Carlinet Thierry Géraud	A Comparative Review of Component Tree Computation Algorithms	IEEE Transactions on Image Processing	16 June 2014
Text detection in street level image	Jonathan Fabrizio Beatriz Marcotegui Matthieu Cord	Text detection in street level image	Pattern Analysis and Applications	5 November 2013
Efficient Multiscale Sauvola's Binarization	Guillaume Lazzara Thierry Géraud	Efficient Multiscale Sauvola's Binarization	International Journal of Document Analysis and Recognition (IJDAR)	25 April 2013
Motion compensation based on Tangent Distance prediction for video compression	Jonathan Fabrizio Séverine Dubuisson Dominique Béréziat	Motion compensation based on Tangent Distance prediction for video compression	Signal Processing: Image Communication	9 February 2012
Shape-based hand recognition	Erdem Yörük Ender Konukoglu Bülent Sankur Jérôme Darbon	Shape-based hand recognition	IEEE Transactions on Image Processing	1 July 2006
Image restoration with discrete constrained Total Variation—Part I: Fast and exact optimization	Jérôme Darbon Marc Sigelle	Image restoration with discrete constrained Total Variation—Part I: Fast and exact optimization	Journal of Mathematical Imaging and Vision	24 March 2006
Image restoration with discrete constrained Total Variation—Part II: Levelable functions, convex priors and non-convex case	Jérôme Darbon Marc Sigelle	Image restoration with discrete constrained Total Variation—Part II: Levelable functions, convex priors and non-convex case	Journal of Mathematical Imaging and Vision	24 March 2006
Spatial reasoning with relative incomplete information on relative positioning	Réda Dehak Isabelle Bloch Henri Maître	Spatial reasoning with relative incomplete information on relative positioning	IEEE Transactions on Pattern Analysis and Machine Intelligence	1 September 2005
Fast road network extraction in satellite images using mathematical morphology and Markov random fields	Thierry Géraud Jean-Baptiste Mouret	Fast road network extraction in satellite images using mathematical morphology and Markov random fields	EURASIP Journal on Applied Signal Processing	5 September 2004